Below are my publications and papers that I'm currently working on. An updated list of published papers can be found on my google scholar profile scholar.google.com/citations?user=uLLD3B8AAAAJ&hl=en. You can also find or request pdfs on Research Gate www.researchgate.net/profile/Clifton_P_Bueno_De_Mesquita
32. Bueno de Mesquita CP, Hartman WH, Ardón M, Bernhardt ES, Tringe SG. Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland. 2024. ISME Communications. https://doi.org/10.1093/ismeco/ycae040
31. Bueno de Mesquita CP, Vimercati Molano Y, Vimercati L, Bueno de Mesquita PJ. 2024. Using evidence-based research to influence dietary change; taking a look in the mirror. New Solutions: A Journal of Environmental and Occupational Health Policy. https://doi.org/10.1177/10482911241235380
30. McQueen JP, Gattoni K, Gendron EMS, Solon AJ, Bueno de Mesquita CP, Hufft RA, Shackelford N, Suding KN, Schmidt SK, Porazinska DL. 2024. Glyphosate-based restoration of a degraded grassland threatens soil health and the diversity of nematode communities. Soil Biology & Biochemistry https://doi.org/10.1016/j.soilbio.2024.109350
29. Hartman WH, Bueno de Mesquita CP, Theroux SM, Morgan-Lang C, Baldocchi DD, Tringe SG. 2024. Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient. mSystems https://doi.org/10.1128/msystems.00936-23
28. Shepherd R, Brigham L, Bueno de Mesquita CP, Gattoni K, Gendron E, Hahn P, Schmidt SK, Smith JG, Suding KN, Porazinska DL. 2023. Trophic group specific responses of alpine nematode communities to 18 years of N addition and codominant plant removal. Plant Soil https://doi.org/10.1007/s11104-023-06281-3
27. Brigham LM, Bueno de Mesquita CP, Spasojevic MJ, Farrer EC, Porazinska, DL, Smith J, Schmidt SK, Suding, KN. 2023. Drivers of bacterial and fungal root endophyte communities: understanding the relative influence of host plant, environment, and space. FEMS Microbiology Ecology 99(5): fiad034. https://doi.org/10.1093/femsec/fiad034
26. Bueno de Mesquita CP, Solon AJ, Mastrangelo CM, Tubman AT, Barfield A, Schmidt SK. 2023. Adverse impacts of Roundup on soil bacteria, soil chemistry and mycorrhizal fungi during restoration of a Colorado grassland. Applied Soil Ecology 185: 104778. https://doi.org/10.1016/j.apsoil.2022.104778
25. Bueno de Mesquita CP, Wu D, Tringe SG. 2023. Methylotrophic methanogenesis: a biochemical and ecological review. Microbiology and Molecular Biology Reviews 87(1) https://doi.org/10.1128/mmbr.00024-22
24. Vimercati L, Bueno de Mesquita CP, DeForce E, Johnson B, Vimercati Molano Y, Ducklow H, Schmidt SK. 2022. Successional patterns of bacteria and eukaryotes along an Antarctic glacial chronosequence. FEMS Microbiology Ecology https://doi.org/10.1093/femsec/fiac122
23. Luecke N, Bueno de Mesquita CP*, Luong M, Schmidt SK, Suding KN, Crawford KM. 2022. Causes and consequences of differences in soil and seed microbiomes for two alpine plants. Oecologia https://doi.org/10.1007/s00442-022-05271-z
22. Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG. 2021. Methylphosphonate and salt-tolerance genes of two novel halophilic Marivita metagenome-assembled genomes from a former solar saltern. Genes 13(1): 148. https://doi.org/10.3390/genes13010148
21. Brigham LM, Bueno de Mesquita CP, Smith JG, Sartwell SA, Schmidt SK, Suding KN. 2021. Do plant-soil interactions influence how the microbial community responds to environmental change? Ecology 103(1): e03554. https://doi.org/10.1002/ecy.3554
20. Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG. 2021. Methanogenesis and salt tolerance genes of a novel halophilic Methanosarcinaceae metagenome-assembled genome from a former solar saltern. Genes 12: 1609. https://doi.org/10.3390/genes12101609
19. Porazinska DL, Bueno de Mesquita CP, Farrer EC, Spasojevic MJ, Suding KN, Schmidt SK. 2021. Nematode community diversity and function across an alpine landscape undergoing plant colonization of previously unvegetated soils Soil Biology and Biochemistry https://doi.org/10.1016/j.soilbio.2021.108380
18. Zhou J, Theroux S, Bueno de Mesquita CP, Hartman W, Tian Y, Tringe SG. 2021. Microbial drivers of methane emissions from unrestored industrial salt ponds. ISME Journal 16: 284-295. https://doi.org/10.1038/s41396-021-01067-w
17. Meade C, Bueno de Mesquita CP*, Schmidt SK, Suding KN. 2021. Growth in the presence of a foreign microbial community promotes plant growth and reduces filtering of root fungi in the arctic-alpine plant Silene acaulis. Plant Ecology and Diversity 13(5-6): 377-390. https://doi.org/10.1080/17550874.2020.1860149
16. Bueno de Mesquita CP, Nichols LM, Gebert MJ, Vanderburgh C ... Dunn RR. 2021. Structure of chimpanzee gut microbiomes across tropical Africa. mSystems: 6: e01269-20. https://doi.org/10.1128/mSystems.01269-20
15. Bueno de Mesquita CP, White CT, Hallett LM, Farrer EC, Suding KN. 2021. Taking climate change into account: non-stationarity in climate drivers of ecological response. Journal of Ecology 109(3):1491-1500. https://doi.org/10.1111/1365-2745.13572
14. Fierer N, Wood SA, Bueno de Mesquita CP. 2021. How microbes can, and cannot, be used to assess soil health. Soil Biology & Biochemistry 153: 10811. https://doi.org/10.1016/j.soilbio.2020.108111
13. Vimercati L, Bueno de Mesquita CP, Schmidt SK. 2020. Limited response of indigenous microbes to water and nutrient pulses in high-elevation Atacama soils: implications for the cold-dry limits of life on Earth. Microorganisms 8(7), 1061 https://doi.org/10.3390/microorganisms8071061
12. Bueno de Mesquita CP, Sartwell SA, Schmidt SK, Suding KN. 2020. Growing season length and soil microbes influence the performance of a generalist bunchgrass beyond its current range. Ecology 101(9): e03095 https://doi.org/10.1002/ecy.3095
11. Bueno de Mesquita CP, Brigham LM, Sommers P, Porazinska DL, Farrer EC, Darcy JL, Suding KN, Schmidt SK. 2020. Evidence for phosphorus limitation in high-elevation unvegetated soils, Niwot Ridge, Colorado. Biogeochemistry 147: 1-13 https://doi.org/10.1007/s10533-019-00624-y
10. Farrer EC, Porazinska DL, Spasojevic MJ, King AJ, Bueno de Mesquita CP, Smith JG, White CT, Sartwell, SA, Schmidt SK, Suding KN. 2019. Soil microbial networks shift across a high elevation successional gradient. Frontiers in Microbiology 10:2887. https://doi.org/10.3389/fmicb.2019.02887
9. Bueno de Mesquita CP, Schmidt SK, Suding KN. 2019. Litter-driven feedbacks influence plant colonization of a high elevation early successional ecosystem. Plant and Soil 444: 71-85 http://doi.org/10.1007/s11104-019-04242-3
8. Bueno de Mesquita CP, Sartwell SA, Ordemann EV, Porazinska DL, Farrer EC, King AJ, Spasojevic MJ, Smith JG, Suding KN, Schmidt SK. 2018. Patterns of root colonization by arbuscular mycorrhizae and dark septate endophytes across a high-elevation landscape. Fungal Ecology 36: 63-74 https://doi.org/10.1016/j.funeco.2018.07.009
7. Bueno de Mesquita CP, Tillmann LS, Bernard CD, Rosemond KA, Molotch NP, Suding KN. 2018. Topographic heterogeneity mediates vegetation responses to climate change in the Rocky Mountains. Arctic, Antarctic, and Alpine Research 50(1), e1504492 https://doi.org/10.1080/15230430.2018.1504492
6. Bowman WD, Ayyad A, Bueno de Mesquita CP, Fierer N, Potter TS, Sternagel S. 2018. Limited ecosystem recovery from simulated chronic nitrogen deposition. Ecological Applications 28(7): 1762-1772 https://doi.org/10.1002/eap.1783
5. Bueno de Mesquita CP, Martinez del Río CM, Suding KN, Schmidt SK. 2018. Rapid temporal changes in arbuscular mycorrhizal fungi and fine root endophytes, not dark septate endophytes, track plant activity and environment in an alpine system. Mycorrhiza 28: 717-726. https://doi.org/10.1007/s00572-018-0863-7
4. Porazinska DL, Farrer EC, Spasojevic MJ, Bueno de Mesquita CP, Sartwell SA, Smith JG, White CT, King AJ, Suding KN, Schmidt SK. 2018. Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem. Ecology 99(9): 1942-1952. https://doi.org/10.1002/ecy.2420
3. Bueno de Mesquita CP, Knelman JE*, King AJ, Farrer EC, Porazinska DL, Schmidt SK, Suding KN. 2017. Plant colonization of moss dominated soils in the alpine: microbial and biogeochemical implications. Soil Biology & Biochemistry 111: 135-142 http://doi.org/10.1016/j.soilbio.2017.04.008
2. Covey KR, Bueno de Mesquita CP, Oberle B, Maynard DS, Bettigole C, Crowther TW, Duguid MC, Steven B, Zanne AE, Lapin M, Ashton MS, Oliver CD, Xuhui L, Bradford MA. 2016. Greenhouse trace gases in deadwood. Biogeochemistry, 130(3): 215-226. http://doi.org/10.1007/s10533-016-0253-1
1. Bueno de Mesquita CP, King AJ, Schmidt SK, Farrer EC, Suding KN. 2015. Incorporating biotic factors in species distribution modeling: are interactions with soil microbes important? Ecography 39(10): 970-980. http://doi.org/10.1111/ecog.01797
*Shared first authorship
Genomic Publications
1. Bueno de Mesquita CP, Tittes S., Mendieta J, Rieseberg L, Grassa C, Kane N. 2016. Helianthus petiolaris subsp. fallax chloroplast, complete genome. GenBank Accession # KU295560.
Magazine Publications
1. Bueno de Mesquita CP. Plants and Fungi. Published in SKUA Nature Magazine, Fall 2022 edition.
31. Bueno de Mesquita CP, Vimercati Molano Y, Vimercati L, Bueno de Mesquita PJ. 2024. Using evidence-based research to influence dietary change; taking a look in the mirror. New Solutions: A Journal of Environmental and Occupational Health Policy. https://doi.org/10.1177/10482911241235380
30. McQueen JP, Gattoni K, Gendron EMS, Solon AJ, Bueno de Mesquita CP, Hufft RA, Shackelford N, Suding KN, Schmidt SK, Porazinska DL. 2024. Glyphosate-based restoration of a degraded grassland threatens soil health and the diversity of nematode communities. Soil Biology & Biochemistry https://doi.org/10.1016/j.soilbio.2024.109350
29. Hartman WH, Bueno de Mesquita CP, Theroux SM, Morgan-Lang C, Baldocchi DD, Tringe SG. 2024. Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient. mSystems https://doi.org/10.1128/msystems.00936-23
28. Shepherd R, Brigham L, Bueno de Mesquita CP, Gattoni K, Gendron E, Hahn P, Schmidt SK, Smith JG, Suding KN, Porazinska DL. 2023. Trophic group specific responses of alpine nematode communities to 18 years of N addition and codominant plant removal. Plant Soil https://doi.org/10.1007/s11104-023-06281-3
27. Brigham LM, Bueno de Mesquita CP, Spasojevic MJ, Farrer EC, Porazinska, DL, Smith J, Schmidt SK, Suding, KN. 2023. Drivers of bacterial and fungal root endophyte communities: understanding the relative influence of host plant, environment, and space. FEMS Microbiology Ecology 99(5): fiad034. https://doi.org/10.1093/femsec/fiad034
26. Bueno de Mesquita CP, Solon AJ, Mastrangelo CM, Tubman AT, Barfield A, Schmidt SK. 2023. Adverse impacts of Roundup on soil bacteria, soil chemistry and mycorrhizal fungi during restoration of a Colorado grassland. Applied Soil Ecology 185: 104778. https://doi.org/10.1016/j.apsoil.2022.104778
25. Bueno de Mesquita CP, Wu D, Tringe SG. 2023. Methylotrophic methanogenesis: a biochemical and ecological review. Microbiology and Molecular Biology Reviews 87(1) https://doi.org/10.1128/mmbr.00024-22
24. Vimercati L, Bueno de Mesquita CP, DeForce E, Johnson B, Vimercati Molano Y, Ducklow H, Schmidt SK. 2022. Successional patterns of bacteria and eukaryotes along an Antarctic glacial chronosequence. FEMS Microbiology Ecology https://doi.org/10.1093/femsec/fiac122
23. Luecke N, Bueno de Mesquita CP*, Luong M, Schmidt SK, Suding KN, Crawford KM. 2022. Causes and consequences of differences in soil and seed microbiomes for two alpine plants. Oecologia https://doi.org/10.1007/s00442-022-05271-z
22. Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG. 2021. Methylphosphonate and salt-tolerance genes of two novel halophilic Marivita metagenome-assembled genomes from a former solar saltern. Genes 13(1): 148. https://doi.org/10.3390/genes13010148
21. Brigham LM, Bueno de Mesquita CP, Smith JG, Sartwell SA, Schmidt SK, Suding KN. 2021. Do plant-soil interactions influence how the microbial community responds to environmental change? Ecology 103(1): e03554. https://doi.org/10.1002/ecy.3554
20. Bueno de Mesquita CP, Zhou J, Theroux S, Tringe SG. 2021. Methanogenesis and salt tolerance genes of a novel halophilic Methanosarcinaceae metagenome-assembled genome from a former solar saltern. Genes 12: 1609. https://doi.org/10.3390/genes12101609
19. Porazinska DL, Bueno de Mesquita CP, Farrer EC, Spasojevic MJ, Suding KN, Schmidt SK. 2021. Nematode community diversity and function across an alpine landscape undergoing plant colonization of previously unvegetated soils Soil Biology and Biochemistry https://doi.org/10.1016/j.soilbio.2021.108380
18. Zhou J, Theroux S, Bueno de Mesquita CP, Hartman W, Tian Y, Tringe SG. 2021. Microbial drivers of methane emissions from unrestored industrial salt ponds. ISME Journal 16: 284-295. https://doi.org/10.1038/s41396-021-01067-w
17. Meade C, Bueno de Mesquita CP*, Schmidt SK, Suding KN. 2021. Growth in the presence of a foreign microbial community promotes plant growth and reduces filtering of root fungi in the arctic-alpine plant Silene acaulis. Plant Ecology and Diversity 13(5-6): 377-390. https://doi.org/10.1080/17550874.2020.1860149
16. Bueno de Mesquita CP, Nichols LM, Gebert MJ, Vanderburgh C ... Dunn RR. 2021. Structure of chimpanzee gut microbiomes across tropical Africa. mSystems: 6: e01269-20. https://doi.org/10.1128/mSystems.01269-20
15. Bueno de Mesquita CP, White CT, Hallett LM, Farrer EC, Suding KN. 2021. Taking climate change into account: non-stationarity in climate drivers of ecological response. Journal of Ecology 109(3):1491-1500. https://doi.org/10.1111/1365-2745.13572
14. Fierer N, Wood SA, Bueno de Mesquita CP. 2021. How microbes can, and cannot, be used to assess soil health. Soil Biology & Biochemistry 153: 10811. https://doi.org/10.1016/j.soilbio.2020.108111
13. Vimercati L, Bueno de Mesquita CP, Schmidt SK. 2020. Limited response of indigenous microbes to water and nutrient pulses in high-elevation Atacama soils: implications for the cold-dry limits of life on Earth. Microorganisms 8(7), 1061 https://doi.org/10.3390/microorganisms8071061
12. Bueno de Mesquita CP, Sartwell SA, Schmidt SK, Suding KN. 2020. Growing season length and soil microbes influence the performance of a generalist bunchgrass beyond its current range. Ecology 101(9): e03095 https://doi.org/10.1002/ecy.3095
11. Bueno de Mesquita CP, Brigham LM, Sommers P, Porazinska DL, Farrer EC, Darcy JL, Suding KN, Schmidt SK. 2020. Evidence for phosphorus limitation in high-elevation unvegetated soils, Niwot Ridge, Colorado. Biogeochemistry 147: 1-13 https://doi.org/10.1007/s10533-019-00624-y
10. Farrer EC, Porazinska DL, Spasojevic MJ, King AJ, Bueno de Mesquita CP, Smith JG, White CT, Sartwell, SA, Schmidt SK, Suding KN. 2019. Soil microbial networks shift across a high elevation successional gradient. Frontiers in Microbiology 10:2887. https://doi.org/10.3389/fmicb.2019.02887
9. Bueno de Mesquita CP, Schmidt SK, Suding KN. 2019. Litter-driven feedbacks influence plant colonization of a high elevation early successional ecosystem. Plant and Soil 444: 71-85 http://doi.org/10.1007/s11104-019-04242-3
8. Bueno de Mesquita CP, Sartwell SA, Ordemann EV, Porazinska DL, Farrer EC, King AJ, Spasojevic MJ, Smith JG, Suding KN, Schmidt SK. 2018. Patterns of root colonization by arbuscular mycorrhizae and dark septate endophytes across a high-elevation landscape. Fungal Ecology 36: 63-74 https://doi.org/10.1016/j.funeco.2018.07.009
7. Bueno de Mesquita CP, Tillmann LS, Bernard CD, Rosemond KA, Molotch NP, Suding KN. 2018. Topographic heterogeneity mediates vegetation responses to climate change in the Rocky Mountains. Arctic, Antarctic, and Alpine Research 50(1), e1504492 https://doi.org/10.1080/15230430.2018.1504492
6. Bowman WD, Ayyad A, Bueno de Mesquita CP, Fierer N, Potter TS, Sternagel S. 2018. Limited ecosystem recovery from simulated chronic nitrogen deposition. Ecological Applications 28(7): 1762-1772 https://doi.org/10.1002/eap.1783
5. Bueno de Mesquita CP, Martinez del Río CM, Suding KN, Schmidt SK. 2018. Rapid temporal changes in arbuscular mycorrhizal fungi and fine root endophytes, not dark septate endophytes, track plant activity and environment in an alpine system. Mycorrhiza 28: 717-726. https://doi.org/10.1007/s00572-018-0863-7
4. Porazinska DL, Farrer EC, Spasojevic MJ, Bueno de Mesquita CP, Sartwell SA, Smith JG, White CT, King AJ, Suding KN, Schmidt SK. 2018. Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem. Ecology 99(9): 1942-1952. https://doi.org/10.1002/ecy.2420
3. Bueno de Mesquita CP, Knelman JE*, King AJ, Farrer EC, Porazinska DL, Schmidt SK, Suding KN. 2017. Plant colonization of moss dominated soils in the alpine: microbial and biogeochemical implications. Soil Biology & Biochemistry 111: 135-142 http://doi.org/10.1016/j.soilbio.2017.04.008
2. Covey KR, Bueno de Mesquita CP, Oberle B, Maynard DS, Bettigole C, Crowther TW, Duguid MC, Steven B, Zanne AE, Lapin M, Ashton MS, Oliver CD, Xuhui L, Bradford MA. 2016. Greenhouse trace gases in deadwood. Biogeochemistry, 130(3): 215-226. http://doi.org/10.1007/s10533-016-0253-1
1. Bueno de Mesquita CP, King AJ, Schmidt SK, Farrer EC, Suding KN. 2015. Incorporating biotic factors in species distribution modeling: are interactions with soil microbes important? Ecography 39(10): 970-980. http://doi.org/10.1111/ecog.01797
*Shared first authorship
Genomic Publications
1. Bueno de Mesquita CP, Tittes S., Mendieta J, Rieseberg L, Grassa C, Kane N. 2016. Helianthus petiolaris subsp. fallax chloroplast, complete genome. GenBank Accession # KU295560.
Magazine Publications
1. Bueno de Mesquita CP. Plants and Fungi. Published in SKUA Nature Magazine, Fall 2022 edition.